Making a Methane Molecule
methTut15.blend – finished methane molecule model
Making A Water Molecule Using Open Babel to Convert Formats and ChemSpider as Source
- http://www.chemspider.com
- http://openbabel.org/wiki/Main_Page
- mol file – water937.mol
- pdb file – water.pdb
- finished blender file – waterTut10.blend
Using Open Babel to Generate 3D Data to Make Models of Molecules Part 1 Ethene
- http://openbabel.org/wiki/Main_Page
- pdb file no double bond in CONECT record – ethene1.pdb
- pdb file with double bond in CONECT record – ethene2.pdb
Using Open Babel to Make Models of Molecules Part 2 Ethane, Ethyne & Benzene Ring
- pdb file – methane.pdb
- pdb file – ethane1.pdb
- pdb file no triple bond in CONECT records – ethyne1.pdb
- pdb file with triple bond in CONECT records – ethyne2.pdb
- pdb file no double bonds in CONECT records – benzene1.pdb
- pdb file with double bonds in CONECT records – benzene2.pdb
Import and Edit a Spherical Fullerene and a Nanotube
- spherical fullerene pdb file – Fullerene.pdb
- nanotube pdb file – Nanotube8x3x1.pdb
- spherical fullerene blender file – fullTut8a.blend
- nanotube blender file – fullTut15a.blend
Making a 3D Model of Graphene
graphTut24.blend – finished file from tutorial
Using the Free Program Jmol to Look at Chemical Structures and Exporting to Blender
- ethene X3D file – ethene.x3d
- file before join – jmolTut17.blend
- finished file – jmolTut20.blend
- Jmol website – http://www.jmol.org
- NCI/CADD Chemical Identifier Resolver – http://cactus.nci.nih.gov/chemical/structure
- PubChem Search – http://pubchem.ncbi.nlm.nih.gov/search/
Importing a Molecule Using the Protein Data Bank Add On, Making a DNA Animation
- http://www.rcsb.org/ – RCSB Protein Data Bank
- http://www.wwpdb.org/ – World Wide Protein Data Bank
- http://www.rcsb.org/pdb/explore/explore.do?structureId=3bse
- pdbTut10.blend – finished file from tutorial
DNA Modelling Part 1 Making Base Pairs to Store the Codes A(red),C(yellow),G(green),T(blue)
- dnaTut33.blend – base pairs before joining
- dnaTut38.blend – base pairs joined, starting file for part 2
- dnaTut64.blend – finished file from tutorial
- dnaTut64a.blend – finished file from tutorial with higher subdivision, smoother
DNA Modelling Part 2 Putting the Base Pairs Together in a Sequence, Adding a Twist